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中央研究院生物醫學科學研究所
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研究資源共享
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人類基因探針資料庫

資料庫名稱:

UniProbe (人類基因探針資料庫)

實驗室主持人:白果能 博士

簡介:
Gene-specific oligonucleotide probes are currently used in microarrays to avoid cross-hybridization of highly similar sequences.


多物種基因探針資料庫

資料庫名稱:

SpecificP (多物種基因探針資料庫)

實驗室主持人:白果能 博士

簡介:
Mammalian genomes are highly complex. To identify the unique sequences of each gene in a mammalian gene database containing tens of thousands of DNA sequences is a computation intensive task.


動植物病毒鑑定探針資料庫

資料庫名稱:

ViralProbe (動植物病毒鑑定探針資料庫)

實驗室主持人:白果能 博士

簡介:
Most virus detection methods are geared towards the detection of specific single viruses or just a few known targets, and lack the capability to uncover the novel viruses that cause emerging viral infections.

 


 

Vir-Mir

資料庫名稱:

Vir-Mir

實驗室主持人: 林文昌 博士

簡介: Virus microRNA prediction and targets

MicroRNAs have been found in various organisms and play essential roles in gene expression regulation of many critical cellular processes.


Human intronic miRNA

資料庫名稱:

Human intronic miRNA

實驗室主持人: 林文昌 博士

簡介: Intronic miRNA and targets

Identification of microRNAs (miRNAs) is essential to studying their physiological functions.


TDL-InDel資料

資料庫名稱:

TDL-InDel

實驗室主持人: 林文昌 博士

簡介: Single amino acid InDels by splicing

We have investigated putative single amino-acid InDel variants with human ESTs.


TDL-CGI

資料庫名稱:

TDL-CGI

實驗室主持人: 林文昌 博士

簡介: Human gene discovery by ESTs

Modern biomedical research greatly benefits from large-scale genome-sequencing projects ranging from studies of viruses, bacteria, and yeast to multicellular organisms, like Caenorhabditis elegans.

 


IGDB.NSCLC

資料庫名稱:

IGDB.NSCLC (肺癌基因體資料庫)

實驗室主持人:周玉山 博士

簡介:Integrated genomic database of non-small cell lung cancer

IGDB.NSCLC provides user friendly interfaces and searching functions to display multiple layers of evidence especially emphasizing on concordant alterations of CNAs with co-localized altered gene expression …


IGRhCellID

資料庫名稱:

IGRhCellID (人類細胞株基因體資料庫)

實驗室主持人:周玉山 博士

簡介:Integrated genomic resources of human cell lines for identification

Cell line identification is emerging as an essential method for every cell line user in research community to avoid using misidentified cell lines for experiments and publications …


OncoDB.HCC (肝癌基因體資料庫)

資料庫名稱:

OncoDB.HCC (肝癌基因體資料庫)

實驗室主持人:周玉山 博士

簡介:
The OncoDB.HCC (http://oncodb.hcc.ibms.sinica.edu.tw) is based on physical maps of rodent and human genomes containing quantitative …


TPMD (台灣多變異性標竿資料庫)

資料庫名稱:

TPMD (台灣多變異性標竿資料庫) Link1 Link2

實驗室主持人:周玉山 博士

簡介:
Taiwan Polymorphic Marker Database (TPMD) is a marker database designed to provide experimental details and useful marker information …

 


 

VisualSNP (SNP功能分析工具)

資料庫名稱:

VisualSNP (SNP功能分析工具)

實驗室主持人:姚文萱 博士

簡介:
VisualSNP, a part of GenePipe project, is a real-time visualized Single Nucleotide Polymorphism (SNP) prioritization and selection tool for functional SNP research.


GenoWatch (基因資料瀏覽系統)

資料庫名稱:

GenoWatch (基因資料瀏覽系統)

實驗室主持人:姚文萱 博士

簡介:
GenoWatch, a part of GenePipe project, is a real-time gene information providing system that started service since November, 2005. The main users are researchers of the Institute of Biomedical Sciences in Academia Sinica, Taiwan.


QualiSeq (基因體序列下載與檢驗工具)

資料庫名稱:

QualiSeq (基因體序列下載與檢驗工具)

實驗室主持人:姚文萱 博士

簡介:
QualiSeq started service on October, 2005. The users are the researchers of the institute of Biomedical Sciences in Academia Sinica in Taiwan. QualiSeq is a Quality Genomic Sequence Retrieval Tool.


PrimerZ (多物種基因與 SNP 的Primer 設計軟體)

資料庫名稱:

PrimerZ (多物種基因與 SNP 的Primer 設計軟體)

實驗室主持人:姚文萱 博士

簡介:
PrimerZ is a web application dedicated primarily to primer design for genes and human SNPs.

SeqTool (Sequenom Primer設計專用序列下載工具)

資料庫名稱:

SeqTool
(Sequenom Primer設計專用序列下載工具)

實驗室主持人:姚文萱 博士

簡介:
SeqTool started service on January, 2007. The users are the researchers of the institute of Biomedical Sciences in Academia Sinica in Taiwan. SeqTool is made for researchers who want to get lots of SNPs flanking sequence to feed into Sequenom for primer design.


GenePipe (基因體序列檢驗與基因分析軟體)

資料庫名稱:

GenePipe (基因體序列檢驗與基因分析軟體)

實驗室主持人:姚文萱 博士

簡介:
GenePipe is a web application help pipeline three major tasks of disease gene finding after SNP markers are identified to be associated with a disease in an association study.


FANS (未知SNP與點突變分析工具)

資料庫名稱:

FANS (未知SNP與點突變分析工具)

實驗室主持人:姚文萱 博士

簡介:
Variations contain single nucleotide polymorphisms (SNPs) and mutations are all frequently used for finding the relationship between diseases and genes.


iSample

資料庫名稱:

iSample

實驗室主持人:姚文萱 博士

簡介: 管理實驗室藥品/耗材/樣本的好幫手樣本與藥品


iQuestion

資料庫名稱:

iQuestion

實驗室主持人:姚文萱 博士

簡介: 線上問卷設計與管理系統
提供問卷(Questionnaire)或個案報告表(CRF)的線上設計/管理/回答問卷/輸出答案報表等功能

 


 

VHMPS (膜蛋白2D結構檢視軟體)

資料庫名稱:

VHMPS (膜蛋白2D結構檢視軟體)

實驗室主持人:黃明經 博士

簡介:
Lacking structures resolved at atomic resolution, the great majority of membrane proteins have typically been depicted in a schematic two-dimensional (2D) topology consisting of putative transmembrane domains predicted…


VACPS (蛋白質結構演化保留檢視軟體)

資料庫名稱:

VACPS (蛋白質結構演化保留檢視軟體)

實驗室主持人:黃明經 博士

簡介: 蛋白質結構演化保留檢視軟體


HaploScape (人類haplotype-tag SNPs資料庫)

資料庫名稱:

HaploScape (人類haplotype-tag SNPs資料庫)

實驗室主持人:黃明經 博士

簡介: 人類haplotype-tag SNPs資料庫


UniMarker (快速基因體序列比對軟體)

資料庫名稱:

UniMarker (快速基因體序列比對軟體)

實驗室主持人:黃明經 博士

簡介:

  1. As more and more genomic DNAs are sequenced to characterize human genetic variations, the demand for a very fast and accurate method to genomically position these DNA sequences is high.
  2. Synteny mapping, or detecting regions that are orthologous between two genomes, is a key step in studies of comparative genomics.

HMDEG (人類與小鼠主組織表現差異基因資料庫)

資料庫名稱:

HMDEG (人類與小鼠主組織表現差異基因資料庫)

實驗室主持人:黃明經 博士

簡介:
Screening for differentially expressed genes on the genomic scale and comparative analysis of the expression profiles of orthologous genes between species to study gene function and regulation are becoming increasingly feasible.


OPAAS (蛋白質結構比對網站)

資料庫名稱:

OPAAS (蛋白質結構比對網站)

實驗室主持人:黃明經 博士

簡介:

  1. Protein structure comparison (PSC) has been used widely in studies of structural and functional genomics.
  2. Comparison of two protein structures often results in not only a global alignment but also a number of distinct local alignments…
  3. The large number of experimentally determined protein 3D structures is a rich resource for studying protein function and evolution…

Foldzilla (蛋白質結構核資料庫)

資料庫名稱:

Foldzilla (蛋白質結構核資料庫)

實驗室主持人:黃明經 博士

簡介: 蛋白質結構核資料庫


PROPEAT ( 蛋白質結構重覆資料庫)

資料庫名稱:

PROPEAT ( 蛋白質結構重覆資料庫)

實驗室主持人:黃明經 博士

簡介: 蛋白質結構重覆資料庫