Dr. Lim, Carmay 林小喬 博士

List of Highlights
文件紀錄

• How the Local Environment of Functional Sites Regulates Protein Function

  Journal of the American Chemical Society May 19, 2020

• Sensitivity of Functional Loop Conformations on Long-Range Electrostatics: Implications for M20 Loop Dynamics in E. coli Dihydrofolate Reductase

  Journal of Chemical Theory and Computation Mar 19, 2020

• Why Cellular Di/Triphosphates Preferably Bind Mg2+ and Not Ca2+

  Journal of Chemical Theory and Computation Nov 27, 2019

• Free and Bound Therapeutic Lithium in Brain Signaling

  Accounts of Chemical Research Sep 26, 2019

• Soluble klotho regulates TRPC6 calcium signaling via lipid rafts, independent of the FGFR-FGF23 pathway

  The FASEB Journal May 07, 2019

• How Pb2+ Binds and Modulates Properties of Ca2+-Signaling Proteins

  Inorganic Chemistry Nov 09, 2018

• The Zinc Linchpin Motif in the DNA Repair Glycosylase MUTYH: Identifying the Zn2+ Ligands and Roles in Damage Recognition and Repair

  Journal of the American Chemical Society (JACS) Oct 08, 2018

• How First Shell–Second Shell Interactions and Metal Substitution Modulate Protein Function

  Inorganic Chemistry Jun 15, 2018

• Competition between Li+ and Na+ in sodium transporters and receptors: Which Na+-Binding sites are “therapeutic” Li+ targets?

  Chemical Science Apr 02, 2018

• How Molecular Size Impacts RMSD Applications in Molecular Dynamics Simulations

  Journal of Chemical Theory and Computation Mar 16, 2017

• Modeled structural basis for the recognition of α2-3-sialyllactose by soluble Klotho

  The FASEB Journal Apr 25, 2017

• How Native and Alien Metal Cations Bind ATP: Implications for Lithium as a Therapeutic Agent

  Scientific Reports Feb 14, 2017

• Efficient Binding of Flexible and Redox-Active Coenzymes by Oxidoreductases

  ACS Catalysis Jun 03, 2016

• Ion Selectivity Strategies of Sodium Channel Selectivity Filters.

  Acc Chem Res. Oct 24, 2014

• Evolution of eukaryotic ion channels: Principles underlying the conversion of Ca2+-selective to Na+-selective channels.

  J Am Chem Soc. Feb 11, 2014

• Two potential therapeutic antibodies bind to a peptide segment of membrane-bound IgE in different conformations.

  Nat Commun. Jan 24, 2014

• Identifying RNA-binding residues based on evolutionary conserved structural and energetic features.

  Nucl. Acids Res. Dec 16, 2013

• Importance of Metal Hydration on the Selectivity of Mg2+ vs. Ca2+ in Magnesium Ion Channels.

  J Am Chem Soc. Oct 02, 2013

• Competition among Metal Ions for Protein Binding Sites: Determinants of Metal Ion Selectivity in Proteins.

  Chem Rev. Sep 16, 2013

• Identification of Labile Zn Sites in Drug-Target Proteins.

  J Am Chem Soc. Sep 11, 2013

• Differential Role of the Protein Matrix on the Binding of a Catalytic Aspartate to Mg2+ vs Ca2+: Application to Ribonuclease H.

  J Am Chem Soc. Apr 23, 2013

• DR_bind: a web server for predicting DNA-binding residues from the protein structure based on electrostatics, evolution and geometry.

  Nucl. Acids Res May 31, 2012

• GeoPCA: a new tool for multivariate analysis of dihedral angles based on principal component geodesics.

  Nucl. Acids Res Dec 01, 2011

• Factors Controlling the Mechanism of NAD(+) Non-Redox Reactions.

  J Am Chem Soc. Nov 03, 2010

• A structural-alphabet-based strategy for finding structural motifs across protein families.

  Nucleic Acids Res. Jun 04, 2010

• Protein/solvent medium effects on Mg(2+)-carboxylate interactions in metalloenzymes.

  J Am Chem Soc May 12, 2010

• Factors Governing the Na(+) vs K(+) Selectivity in Sodium Ion Channels

  J Am Chem Soc. Jan 28, 2010

• Determinants of K⁺ vs Na⁺ Selectivity in Potassium Channels

  J. Am. Chem. Soc. May 20, 2009

• Common physical basis of macromolecule-binding sites in proteins.

  Nucleic Acids Research Nov 06, 2008

• Metal binding affinity and selectivity in metalloproteins: insights from computational studies.

  Annu Rev Biophys. Jan 01, 2008

• Mononuclear versus Binuclear Metal-Binding Sites: Metal-Binding Affinity and Selectivity from PDB Survey and DFT/CDM Calculations.

  J. Am. Chem. Soc. Feb 28, 2008

• Predicting RNA-binding sites from the protein structure based on lectrostatics, evolution and geometry.

  Nucleic Acids Research Jan 08, 2008

• All-Electron Calculations of the Nucleation Structures in Metal-Induced Zinc-Finger Folding: Role of the Peptide Backbone.

  J. Am. Chem. Soc. Sep 21, 2007

• Effect of Carboxylate-Binding Mode on Metal Binding/Selectivity and Function in Proteins.

  Acc. Chem. Res. Oct 14, 2006

• Competition between Protein Ligands and Cytoplasmic Inorganic Anions for the Metal Cation: A DFT/CDM Study.

  J. Am. Chem. Soc. Jul 21, 2006