計算醫學核心實驗室 Computational Medicine Core
我們提供生醫資料分析的服務、生資開源軟體的教育訓練以及研究計畫的合作。我們的分析服務主要著眼於表關基因組、轉錄組、蛋白質組或整合多組的資料分析、公共資料下載蒐集、蛋白質結構預測、與機器學習演算法的應用。
實驗室目前配備有兩台DELL R7425伺服器 (64core CPU與256G RAM)來進行各項NGS資料分析及兩台 GPU Linux 伺服器進行機器學習和蛋白質結構模擬分析
We provide services of biomedical data analysis, education and training of open-source bioinformatic tool, and collaboration of research project. Our services majorly focus on NGS data analysis from epigenomics, transcriptomics, proteomics, and also multi-omics, data collection from public domain database, protein structure prediction, and application of machine learning algorithm.
We have two DELL R7425 computing servers (64 core CPU and 256G RAM) for doing NGS data analysis and two GPU machines with Linux servers for machine/deep learning and protein structure modeling and analysis.
負責人
成員 Staff
施宣誠 ( Shih, Edward S.C. )
電話: (02)2652-3041
孫慶姝 ( Suen, Ching-Shu )
電話: (02)2652-3041
- High-throughput Multi-omics Data 高通量多體學資料 (Updated:2023/02/22)
- 次世代定序資料處理 (Updated:2023/02/22)
- 其他次世代定序資料處理 (Updated:2023/02/22)
- 資料分析支援與諮詢 (Updated:2023/02/22)
- AI-empowered Bioinformatics 人工智慧生物資訊 (Updated:2023/02/22)
- 資料處理 (Updated:2023/02/22)
- AI 模組建構 (Updated:2023/02/22)
- Result Analysis (Updated:2023/02/22)
- Protein Structural Bioinformatics 蛋白質結構生物資訊 (Updated:2023/02/22)
- 蛋白質序列與功能分析 (Updated:2023/02/22)
- 結構模擬 (Updated:2023/02/22)
- Education and Training 教育訓練 (Updated:2023/02/22)
- 教育訓練 (Updated:2023/02/22)
- Research Collaboration 計畫研究合作 (Updated:2023/02/22)
- 研究合作 (Updated:2023/02/22)
- NASQAR RNA-seq analysis integrated tool (更新日期:2019/12/25)
- IRIS: Integrated Cell-type-specific Regulon Inference Server from Single-cell RNA-Seq (更新日期:2023/03/03)
- GSEA 分析工具使用簡介 (更新日期:2021/10/22)
- DAVID 生物資訊資料庫簡介 (更新日期:2021/10/22)
- WEBGESTALT (Web-based RNA-seq analysis tool) (更新日期:2020/09/16)
- Morpheus (on-line Clustering tool) (更新日期:2020/09/16)
- PathView (Web based tool for integrating DEGs into KEGG pathways of interest) (更新日期:2020/09/16)
- TO-GCN (Stand alone tools for constructing time-ordered gene coexpression network) (更新日期:2020/09/16)
- Cytoscape (Stand alone tool for network visualization) (更新日期:2020/09/16)
- iDEP: integrated web service for transcriptome analysis (更新日期:2021/02/18)
- ASAP (Automated Single-cell Analysis Pipeline (更新日期:2023/03/03)
- g:Profiler (Gene ID converter) (更新日期:2021/10/22)
- VolcaNoseR (Creating Volcano Plot) (更新日期:2021/10/22)