Dr. Shen, Chen-Yang 's publons link picture

Dr. Shen, Chen-Yang

Distinguished Research Fellow
  • 02-27899036 (Lab) (Room No: N143)
  • 02-27823047 (Fax)

Specialty:
  • Molecular Epidemiology
  • Cancer Genetics
  • Personalized Medicine

Education and Positions:
  • Ph.D. Univ. of North Carolina at Chapel Hill


Technological advances have provided opportunities that allow genetic variants in the whole genome to be analyzed in association studies, thus giving unique opportunity for identifying moderate risk alleles without prior knowledge of etiology. This genome-wide association studies (GWAS) have been successful in identifying the genetic component of predisposition to many human complex diseases. By applying novel and precise analytical methods, current research focuses on exploring the biological mechanisms underlying susceptibility loci known as causal variants. In three of our recent studies, based on the data of GWASs, we have demonstrated the molecular basis of important causal variants associated with breast cancer progression and hyperlipidemia with an emphasis on using post-GWAS analysis and experiments to gain insight into etiology. A series of experimental approaches, including the use of bioinformatic databases (such as eQTL and ENCODE), cell-based analyses and CRISPR/Cas9 genome-editing system, were used and identified specific transcription factors, which were able to discriminately bind to the specific alleles of these genetic variants. These studies demonstrate how post-GWAS studies can be conducted to generate useful information of translation relevance.  
Our lab is also interested in breast cancer stem cell. We have identified specific marker, which is a long-non-coding RNA, that can be specifically identified estrogen-receptor-positive breast cancer stem cell. In addition, we have highlighted a microRNA-mediated suppression of CXCR4/p-Akt signaling and thereby affected mesenchymal stem-cell genesis, indicating its potential as a therapeutic target for invasive breast cancer.
Finally, we have introduced new approaches to explore possible contribution of histone overexpression, histone modification and DNA repair affecting breast cancer progression.

Our Team
Team photo

  1. Mueller SH, Lai AG, Valkovskaya M, Michailidou K, Bolla MK, Wang Q, Dennis J, Lush M, Abu-Ful Z, Ahearn TU, Andrulis IL, Anton-Culver H, Antonenkova NN, Arndt V, Aronson KJ, Augustinsson A, Baert T, Freeman LEB, Beckmann MW, Behrens S, Benitez J, Bermisheva M, Blomqvist C, Bogdanova NV, Bojesen SE, Bonanni B, Brenner H, Brucker SY, Buys SS, Castelao JE, Chan TL, Chang-Claude J, Chanock SJ, Choi JY, Chung WK, Colonna SV, Cornelissen S, Couch FJ, Czene K, Daly MB, Devilee P, Dork T, Dossus L, Dwek M, Eccles DM, Ekici AB, Eliassen AH, Engel C, Evans DG, Fasching PA, Fletcher O, Flyger H, Gago-Dominguez M, Gao YT, Garcia-Closas M, Garcia-Saenz JA, Genkinger J, Gentry-Maharaj A, Grassmann F, Guenel P, Gundert M, Haeberle L, Hahnen E, Haiman CA, Hakansson N, Hall P, Harkness EF, Harrington PA, Hartikainen JM, Hartman M, Hein A, Ho WK, Hooning MJ, Hoppe R, Hopper JL, Houlston RS, Howell A, Hunter DJ, Huo D, Ito H, Iwasaki M, Jakubowska A, Janni W, John EM, Jones ME, Jung A, Kaaks R, Kang D, Khusnutdinova EK, Kim SW, Kitahara CM, Koutros S, Kraft P, Kristensen VN, Kubelka-Sabit K, Kurian AW, Kwong A, Lacey JV, Lambrechts D, Le Marchand L, Li J, Linet M, Lo WY, Long J, Lophatananon A, Mannermaa A, Manoochehri M, Margolin S, Matsuo K, Mavroudis D, Menon U, Muir K, Murphy RA, Nevanlinna H, Newman WG, Niederacher D, O\'Brien KM, Obi N, Offit K, Olopade OI, Olshan AF, Olsson H, Park SK, Patel AV, Patel A, Perou CM, Peto J, Pharoah PDP, Plaseska-Karanfilska D, Presneau N, Rack B, Radice P, Ramachandran D, Rashid MU, Rennert G, Romero A, Ruddy KJ, Ruebner M, Saloustros E, Sandler DP, Sawyer EJ, Schmidt MK, Schmutzler RK, Schneider MO, Scott C, Shah M, Sharma P, Shen CY, Shu XO, Simard J, Surowy H, Tamimi RM, Tapper WJ, Taylor JA, Teo SH, Teras LR, Toland AE, Tollenaar RAEM, Torres D, Torres-Mejia G, Troester MA, Truong T, Vachon CM, Vijai J, Weinberg CR, Wendt C, Winqvist R, Wolk A, Wu AH, Yamaji T, Yang XR, Yu JC, Zheng W, Ziogas A, Ziv E, Dunning AM, Easton DF, Hemingway H, Hamann U, Kuchenbaecker KB Aggregation tests identify new gene associations with breast cancer in populations with diverse ancestry. Genome medicine 15(1), 7 (2023) [JCR] [WOS]
  2. Yang WS, Chuang GT, Che TP, Chueh LY, Li WY, Hsu CN, Hsiung CN, Ku HC, Ching LY, Chen YS, Hee SW, Chang TJ, Chen SM, Hsieh ML, Lee HL, Liao KC, Shen CY, Chang YC Genome-Wide Association Studies for Albuminuria of non-Diabetic Taiwanese Population American journal of nephrology doi: 10.1159/000531783, 1-11 (2023) [JCR] [WOS]
  3. Chou WC, Chen WT, Shen CY A common variant in 11q23.3 associated with hyperlipidemia is mediated by the binding and regulation of GATA4. NPJ genomic medicine 7(1), 4 (2022) [JCR] [WOS]
  4. Liu PH, Chuang GT, Hsiung CN, Yang WS, Ku HC, Lin YC, Chen YS, Huang YY, Lin CH, Li WY, Lin JW, Hsu CN, Hwang JJ, Liao KC, Hsieh ML, Lee HL, Shen CY, Chang YC A genome-wide association study for melatonin secretion. Scientific reports 12(1), 8025 (2022) [JCR] [WOS]
  5. Wong HS, Tsai SY, Chu HW, Lin MR, Lin GH, Tai YT, Shen CY, Chang WC Genome-wide association study identifies genetic risk loci for adiposity in a Taiwanese population. PLoS genetics 18(1), e1009952 (2022) [JCR] [WOS]
  6. Ho WK, Tai MC, Dennis J, Shu X, Li J, Ho PJ, Millwood IY, Lin K, Jee YH, Lee SH, Mavaddat N, Bolla MK, Wang Q, Michailidou K, Long J, Wijaya EA, Hassan T, Rahmat K, Tan VKM, Tan BKT, Tan SM, Tan EY, Lim SH, Gao YT, Zheng Y, Kang D, Choi JY, Han W, Lee HB, Kubo M, Okada Y, Namba S, Park SK, Kim SW, Shen CY, Wu PE, Park B, Muir KR, Lophatananon A, Wu AH, Tseng CC, Matsuo K, Ito H, Kwong A, Chan TL, John EM, Kurian AW, Iwasaki M, Yamaji T, Kweon SS, Aronson KJ, Murphy RA, Koh WP, Khor CC, Yuan JM, Dorajoo R, Walters RG, Chen Z, Li L, Lv J, Jung KJ, Kraft P, Pharoah PDB, Dunning AM, Simard J, Shu XO, Yip CH, Taib NAM, Antoniou AC, Zheng W, Hartman M, Easton DF, Teo SH Polygenic risk scores for prediction of breast cancer risk in Asian populations. Genetics in medicine : official journal of the American College of Medical Genetics 24(3), 586-600 (2022) [JCR] [WOS]
  7. Ho Peh Joo, Khng Alexis Jiaying, Tan Benita Kiat-Tee, Tan Ern Yu, Tan Su-Ming, Tan Veronique Kiak Mien, Lim Geok Hoon, Aronson Kristan J., Chan Tsun L., Choi Ji-Yeob, Dennis Joe, Ho Weang-Kee, Hou Ming-Feng, Ito Hidemi, Iwasaki Motoki, John Esther M., Kang Daehee, Kim Sung-Won, Kurian Allison W., Kwong Ava, Lophatananon Artitaya, Matsuo Keitaro, Mohd-Taib Nur Aishah, Muir Kenneth, Murphy Rachel A., Park Sue K., Shen Chen-Yang, Shu Xiao-Ou, Teo Soo Hwang, Wang Qin, Yamaji Taiki, Zheng Wei, Bolla Manjeet K., Dunning Alison M., Easton Douglas F., Pharoah Paul D. P., Hartman Mikael, Li Jingmei Relevance of the MHC region for breast cancer susceptibility in Asians Breast Cancer 10.1007/s12282-022-01366-w, 1-11 (2022) [JCR] [WOS]
  8. Wu LS, Huang MC, Chen CK, Shen CY, Fann CS, Lin CY, Lin CC, Cheng AT Genome-Wide Association Study of Lithium-Induced Dry Mouth in Bipolar I Disorder. Journal of personalized medicine 11(12), 1265 (2021-11) [JCR] [WOS]
  9. Liao SF, Koshiol J, Huang YH, Jackson SS, Huang YH, Chan C, Huang C, Liu PC, Chen YJ, Hsieh RJ, Huang CP, Lu SN, Chen CJ, Shen CY, Lee MH Postdiagnosis aspirin use associated with decreased biliary tract cancer-specific mortality in a large nationwide cohort. HEPATOLOGY 74(4), 1994-2006 (2021-10) [JCR] [WOS]
  10. Lo YH, Cheng HC, Hsiung CN, Yang SL, Wang HY, Peng CW, Chen CY, Lin KP, Kang ML, Chen CH, Chu HW, Lin CF, Lee MH, Liu Q, Satta Y, Lin CJ, Lin M, Chaw SM, Loo JH, Shen CY, Ko WY Corrigendum to: Detecting Genetic Ancestry and Adaptation in the Taiwanese Han People. Molecular biology and evolution 38(10), 4656 (2021-09) [JCR] [WOS]